NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1377

Scaffold Ga0153698_1377


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1377 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)19200
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031872Metagenome / Metatranscriptome181N
F033435Metagenome / Metatranscriptome177N
F042901Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_137711F033435AGGAMSSIFDAIPKTEGRPNYSVDIERFIGAPGSFTFREPKASDLFPRPEVQKSLKIAFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSDIYLYVVGEFAKAFPIDIEAAVDEVPND*
Ga0153698_137713F031872GGAMVESLVVDEWIYDTLTADATLQALLAVDNRAPSYQQGIYLYFAPEKDPISLRQPQVPYIVVRHTDAGQTDTTSVCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNQQSVNSTTPVFFLNRQSVSSSIDVSQDGRVDNGIVQLYVATITL*
Ga0153698_13775F042901N/AMARKPADNQPAIERVAEKPEGLLWLLKASEHEILERLHQEGALIYIHPALDGVVSYRIEENPHHDQKVVHVWR*
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