Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1024 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1024 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	52320
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (33.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

52320

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (33.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F025268	Metagenome / Metatranscriptome	202	N
F074792	Metagenome	119	N
F095350	Metagenome	105	N
F095370	Metagenome	105	N
F101028	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_102410	F095370	N/A	MKQLEGLNQNDIIPKVTGKITKLWPAKEKEGKYGPYKIQGGDIEIDGDIYGITFMDKEQNPDVLKGKVVTISSTKGKMGLGGVELSHESYSKSDGTKVDRDCIKVKKTAKVELAGGETIKEPVSVTRETRPVKQADGDPKKAIDSIVEMHLYIDGLVRHAYAGRTSDEETLRSYVASVFIEANRKGISYAVASEPPKPACDPKDWGAAIVPSGSMKGKTLGSVGKPALTKLYQYYLEKGFDSPFSKCVEQAGIDLNLDGPLEEQDDIPWN*
Ga0153703_102420	F014513	N/A	MADTLDEMVEVVKGFVGDSGVCSYDRAVKAVNQARRLLWNKKAWTTQEEYVQICCVNDCFTLPSRYEQIKLAWIGNRPASLADEWFNATDSYALQADQSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKIKVTTVNPPTLAKSDLLVKGIRAVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPRTCECITLYASKKYFDLVDPKELVEFNADAMIYAVLALNSRENRKAQEFLANLSLAVQEQEKEMEGAEIPTAAPLRIANFQRPENLIGNYLGSPSADDYFFQPSWP*
Ga0153703_102423	F101028	N/A	MPTEGSVFDGFTSIVAQDADTHPSYLPEFYVAESVNRTFRGGINQTRPSIRNLNIIAGKGQPETIVNDIQTGNFQGAYSYRKVNEAALGDGLLISVSGKIYFLHITNNYATAYILSGLTDWNDASLMHTWFVQAEDRVYIQNGYQYAIAWGGVVGAVSATLITKNTYCEIVTVGTTDYTLIGAPSNTVGVKFTANGPATGTGTVAMPAYRLYPSKGQMPIGTIMEYAFGRVFVSDRFNQIYASDIIFGAGFTDTTNTQNFTEITYWAEGGAFSTPAMMGEITAMKVMPYIGGNLRGQGELVVLTTNGAFSMDVSIPRALWNTSNIQRISLLGRGCTSPHVSLVNSELWFRSHDGWAFYSNSQSEFGRFFSLRKLSREVNKWVDLDTKWLKQFASTMYINNYLVSTVAPQTKKNNARGLHRYHRGMVVLDLDQTASPSPDADLTFRWNGLWTGFRPTQLLTAMIDGEKRGFGFSFDQDEKNRLYEITNSSSDDYGPYGTSKIKSFITTGRYDFNKSGLTNKFIRKKITGGEIWMSDIPGEVTSQVEYRSDSNPCWSELKVPTTFGCNPCSPTLINTCTPRRGGNQYKRYKFTTPDPSECNNIAGIPSVEGSEFQLKINLTGVATVDRVRIMANIKNNEDSPIGDCPEDQQECAEICCPERYWDYAIYNG*
Ga0153703_102437	F025268	N/A	MASEQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSTYFTRFEEQAWPLNHTTEQKGFRFGRGFYDPCSPFRKIVDTYCNTDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRANYIGGAGHKWLGVVNDDGVYCGLLDDAAWFIPEHTTNNESGYDLCHIRVKVAAADLNKIAYLSLDMLDDALVELQNEDDAFRLDLSEAAGMPLLDIVIPDPRVGRGLYFQAKRNNGYWDANTDFDSRLTSLKLGVNRIIGDYAFGYDINSLRFNADSAFNATLPAFNASDASTWPRLVRVPRYVKVAQENGCSYIPNRDYQNADFAISAAIVNKAMTKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTLIHVFLHRMPKARNLYGSCCELNTYTACSTTPDCYSCEGVGDIVAPTP*
Ga0153703_102443	F095350	N/A	MSRKIVSQNGIRKYGMVFPENMNPLEIELYCYALTRGDYGRTMRVKKNMELSDYKLLSPYEHFIQAVQYMWPTDVVIKNRGYTNTQLLRTLEELCNNDDVCLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCASNKIGNLVDYRHMIVWGGASGDDEKDYRNAIKAIAFPPGSEGQKAIDTTRGRKNDRIRVALDELPEMEMGAINIRQNLSSNDDKVFIGIGNPSAGDNPHTRWAMPKGHTNFDAVSADMEKWETETGVCLFYNGMKSPNFAAPPNEPSPFPFLMDRKKQADILKMSYGDENSVDYVRNAIGWWPKSGFAQTILTADVIRNADTYSDLSGITMNL*
Ga0153703_102447	F074792	GGAG	MDNHNSNIDLDMTAFKFLELARKSVLITNMSLAEAMGQGIFSTHEVFNGDGGYMIMGVRPNSTALAATYSGKRILWSELALIKDEDLELHHKLHAVDCQDDHMSDLTWTNLVDQIEEWVKCEREEIDLDYR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1024

Overview

Ecosystem & Geography

Associated Families

Sequences