Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1593 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1593 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11680
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11680

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (71.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F003195	Metagenome	501	N
F005452	Metagenome / Metatranscriptome	400	N
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_159316	F009883	GGAG	MNEATIVIAMVIAGALWAVMAYSVGFKEGQRQGYTRGRAVSRHISQLNEKVSN*
Ga0153703_159317	F012452	AGAAGG	MAAFWENYEGNKERTDRWIVTFANGRLEAHIVEFNAEKGYVLVQAKAWRNQDETEPAGIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKVTKEQMQQIKINDSTKPVEDDYWTTKFGDIPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV*
Ga0153703_159318	F000403	GGAG	MSDYMEILNPQTMTARLYFQGEVLEEYKIEQCDKCSKLVKLDSFGYQKGYDPHEKVIWFCGDCR*
Ga0153703_159319	F000903	N/A	MITRMEEIQCMIAAIDHCKDRNADHSSRIVRDLSWFEYVAQMAESMVSEWVVAKTLGYDYKPGITWDKEKADVGEHIEVKWSPNPHSNLWIQESDRHDRDIAVLVTGNAPKMHIVGWIPVAVCKKPRYRNQSQNNWSVPQINLQPIETLMRSNYAHPSI*
Ga0153703_159320	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEEMSDGSL*
Ga0153703_15934	F003195	AGGA	MPAIVTASQLRQILGVSVSLYSDVQLDSFIDSAEQTVLPLLTQYQSSVTFANVDDSVIYFTTMRPNYFVPGQSVVVTGAGAYSATYTVTDDRIEPYTFTAATAAADRDYPLPFIPAATATLSGGSAAALYANTPPIENAILVVAVEIFQSITAPGNQIMSDNFQPAPFILGRSLSNRVIGLLGPFLDVETMCQ*
Ga0153703_15935	F005452	N/A	MSIESVIRTPLATALSSIAANVYNGIPETMTSPSICLIPDAPYLESVLINGATTKVKVNLTVTGVVGYANNAAALDNLETLMINIISAMPGGYEVGNVNQPQPLEVGAGKYLTADLQVSTYYTN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1593

Overview

Ecosystem & Geography

Associated Families

Sequences