NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1001

Scaffold Ga0153702_1001


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1001 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)276376
Total Scaffold Genes354 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (14.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031494Metagenome182Y
F070106Metagenome123N
F088899Metagenome109N
F096714Metagenome104N
F105174Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0153702_1001193F031494N/AVQIVILLSKDVPEDISELILGHKLEGGYSIDYALNSLVSYHNGKEIIIFNFTKYLVLDNRFSGYKIDDYGTKIVINFK*
Ga0153702_1001194F105174N/AMLKLTETQKNQTYEISLQSNGIVVGSFVKIDGFFYYYPPKERFWGCYSEEFLKSLSNELEKLNYPINKSIDEYFELQT*
Ga0153702_1001196F070106AGGAGMKKVKEVFVIFNPYDNGYYDGEGFFRGILFCKKYVEKENAILDIEKILNSSIGKTYLKIETLHTNS*
Ga0153702_1001252F088899N/AMIDLVYIMEKVDDKIRFIISFNDQEVGSLYFERAKRTFQRKPVSMDAWVCVDAKIERLYEVSNYEIIPKEIVEVCQKMIKAEYL*
Ga0153702_1001278F096714N/AMIDTKKLSEKLKYLMEQESNRQFEIFDLDVDFYDGNSGYQLFIKFDYFGVIDSQMPGFATDISKMIGKIEKIVSKVTITPEKKLSLSQEVEVESFIDQIDYKIEDRHIFTLSFLVHYLDNN*
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