NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153702_1119

Scaffold Ga0153702_1119


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1119 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)30031
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (44.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F005633Metagenome / Metatranscriptome394Y
F006107Metagenome / Metatranscriptome381N
F009147Metagenome / Metatranscriptome322N
F009398Metagenome / Metatranscriptome318N
F010611Metagenome / Metatranscriptome301N
F038227Metagenome / Metatranscriptome166N
F074803Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0153702_111929F010611GAGGMTQKEYGDRIGISQPRVAQLIAQGMPMTSPEAADIWRSQNIRSKRKPDSPKPPTPEHTAIEQEGPYRPAEASNPIDTATAAIDSPQGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAASAKNLTSARDEVIAQAEKERRLVSGDWVRRVMQEHDGAVASLLKAMPKQLSGRISPHDPEHCEKELDRWVQEVALKTLHQTDPWK*
Ga0153702_111935F005633N/AMRIATTISVDKNGKTKLVSGPEVDATLQRDGFNTATIPEGGKLILWIQGALAPKVRKG*
Ga0153702_111936F009147N/AMAFQADISTEYSMGREGFELFTTTAAQTGAWSGLIPTEPTVFTSITGNRIAGTWTSKTIPAGFPLVGNITGFQISSGSVVAFNARA*
Ga0153702_111937F038227GAGMISLGIALNRLVAGQAGGTDAPVLRRDVLQEDDFFVLQEDGSGKLVITFGTFDSLLREDAGFLQQEDAFKLQIQSN*
Ga0153702_111940F074803N/AMIKIEFTPQQFNQLYELLVIGMKAGNVTNMKVGIPLVDLLEAAAAQHKPE*
Ga0153702_111945F009398N/AVTIIGSSLQQGMTVLQQMLGAPMFIWEGRSIRCIPAMVTDANTPVPGGFQDNVASRILVKFSDWKTWDSTLVSMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR*
Ga0153702_111946F005024GAGGMTVDSSRFDAAMKQYLTQTSRDLHKAVNSRFFYLMVRLFVLVPPKSPGQERRRISDYLGTPLGNINRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKIIRIYNKGFTQFQSPKWKPLSKPAGYKAPKKTNAALVSLANQYGLPEENVAVHKGTKARGIQATPGFNPTASVVMTAGVADNQYNRVAMIYNQAMQKAMDDELAELTNHMTEAMLANGKVLEDNGIEIK*
Ga0153702_111947F006107GGAMNAVALRAELAVADYLASADWSASGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRTDLTCELEIAIELQLSADDTDEADVLTTVQVLDNRILPLFDESGASVLDAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATI*
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