Scaffold Ga0153699_1303

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0153699_1303

Scaffold Ga0153699_1303

Overview

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1303 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	19986
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → unclassified Sphingobacteriia → Sphingobacteriia bacterium 28-36-52	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045102	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_13035	F045102	N/A	MAKDTAQFIELAEVIYQYIDQAKLTSAEYRRLWPIGVRGVEEIGYDVHMEPKTEKLIVNANKTVTLPTNYIGFSKVGVLNSKGEVATLRRNSNLTEYKIDQTDRLSKNTDDSVGNTYRLQDLAYVNYFDGARYANIFGAGAALNSQGQFDISETEGLIYLDNDFVYDYVILEYFSSPSDDVNFKIPIQVRDAVLSYIAWRDIEYLPAGRRSTMGDKQMRRKEYYNQKRLAKMRVNPVTPWDANEQIRLSQKLVAKS*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.