Scaffold Ga0153699

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1314 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011338 Open in IMG/M

Scaffold ID

Ga0153699_1314 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	19581
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (28.95%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19581

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (28.95%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5955556

Long. (^o)

126.817072

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F042339	Metagenome	158	Y
F043894	Metagenome	155	N
F053068	Metagenome	141	Y
F069698	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_13141	F026004	N/A	LIAAVAVVLLIMIITSVKSCNENTNPAIQRLQGINDSLYQIIDVNNIKTDSLFLKIDSLQIHQDTIIQQQQITNEIYRNETYNILSSTPSNANAQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ*
Ga0153699_13142	F042339	N/A	MMYWYATAQEIDSLYQMERLKVTYYAKITGIQAASYETLAEIYKNKESIEKAIATEKDNEIAQLKKRNRRLIITNTALTLGITAVAVSTIYFTIF*
Ga0153699_131426	F043894	N/A	MRKQNELNGLIARTLGSKAALLRAMQRSNTPITKKTLYNWCMDYRTIKVAQLVNLANAMNVPICEVINSITIKNEGDE*
Ga0153699_131429	F011136	GAGG	MDRPAQDVEDIVCGGKVEAYVNRAIWLSWHSNRSDYAIKYRKYYELHVDKQVEDTKQDETWIGAFIDGEYLYSAIGRMNEFDAILLRLYSKPDFDYKELSVTTGIPYPYLRTSIHRALKKIREYVKLQRSIAHSEREASDMQKM*
Ga0153699_13143	F069698	N/A	MQFEPRDIVTIVGGAISLTGLYYALKRDVVKVSSALGKVESYHKREVTMLSDSIKETKEEFNTKLNTMKDEQNKAIDKLEAKIDVIASQNMTISTNLAELAGFIRGNK*
Ga0153699_13147	F053068	N/A	MEQSKKETAIRRLHLALKKRFQGQAIKMPWAEMEGFLKAVETIELNNIHEAYNDGYRHGESGLPNATHE*
Ga0153699_13148	F009003	N/A	MKAKEKAWQLYSNYFDIVENGTQEGNLVDAHIKALNAALYCVDEAMVNAPDDIVNDFEGTGEYYSVKAYYMHVKNELLKLKHDEKRTEQVNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153699_1314

Overview

Ecosystem & Geography

Associated Families

Sequences