Basic Information | |
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Taxon OID | 3300011338 Open in IMG/M |
Scaffold ID | Ga0153699_1691 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 12644 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (20.69%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Seoul, South Korea | |||||||
Coordinates | Lat. (o) | 37.5955556 | Long. (o) | 126.817072 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F009003 | Metagenome / Metatranscriptome | 324 | Y |
F026004 | Metagenome | 199 | Y |
F037731 | Metagenome | 167 | N |
F042339 | Metagenome | 158 | Y |
F053068 | Metagenome | 141 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153699_169111 | F053068 | N/A | MDQQSKKETAIRRLHMALKKRFQGQAIKMPWSEMEGFLRAAETVEMTNIFSAYDDGYTDCENGIPNQTKVKADESDTNV* |
Ga0153699_169112 | F009003 | N/A | MKAKEKAWQLYSNYFDIVENGKQEGNLVDAHIKALNAALYCVDEALSNAPDDIVNDFDGTGEYYSVKAYYMHVKNELLKLSKHDAKGTEQVEHR* |
Ga0153699_16913 | F037731 | GAG | MATKKQKNEQPNKVDLKGLRYKLELFDGFWSIPLAFLVFAVSGTVSVAYFGDALISTEYIQYIVLAAMVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLLLYAFYFAAYLYILHMLMTVTA* |
Ga0153699_16915 | F026004 | N/A | MEKDNLRNTVLIAAVAVVLLIMIITSVKSCNENTNPAIQRLQGINDSLYQIIDANNIKTDSLFLKIDSLQIHQDTIIQQQQITNEIYRNETYNILSSTPSNANAQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ* |
Ga0153699_16916 | F042339 | N/A | MMYWYATAQEIDSLYQMERLKVTYYAKITGIQASSYETLAEIYKNKESIEKAIATEKDNEIAQLKKRNRRLIITNTALTLGITAVAVSTIYFTIF* |
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