NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10304

Scaffold Ga0153700_10304


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10304 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)26348
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (78.05%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039599Metagenome / Metatranscriptome163Y
F046202Metagenome151Y
F077007Metagenome / Metatranscriptome117N
F078231Metagenome116Y
F082122Metagenome113Y
F093271Metagenome106Y
F102518Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1030416F093271GGAGGMRGKKVKEKMSIVTVVSFDTSSRFALRIAIAHTVGSMVTLTNLGSVTRGGTNFIPSHDLKRMLETSGQRATEVTQGNGND*
Ga0153700_1030419F078231AGGMKTEPDLIDIYAMFALMAVMQKHAKVAKSKIDIAYEAFEQAKAMMEVREDFVRERSE*
Ga0153700_1030421F046202AGGAGGMFDSFGDFFWTFMAMSGFMFWICVVIFVGMVIKRNRAKRKGYYE*
Ga0153700_1030423F102518AGAAGGMKTIFIAVCAVSALVGCSSSKEPYVTAQNLVMDRNIQPLSRGEQIDAIKDCQEAGLRARVIYGKRLVNGYSTETVIDVLCSNKYAF*
Ga0153700_1030437F082122AGGAGGMREETLLEKVVIAIMFIAFLVFWMWVPDFTLSEEDCMKQDSSAYVKNLCSESQAK*
Ga0153700_103045F039599AGGAGMLSEETVKQIFFQSDRPRKDPLIADEVDIMQFAHNIELYLAVEHARKEHARCVKIVKDLNRAVGDKLETLRPA*
Ga0153700_103049F077007N/AMRLMRNQHATHVDFFQFKGLIETNPKATPCNIDMVFERKCKFFVGEWKREGEGISQGQGLLLRNLARQPQFTVVIIQGNTDGDMVVEKFEQLCSDGRFRVRGKSADDLKKFVTRWYNWADAQEFQ*

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