NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10750

Scaffold Ga0153700_10750


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10750 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)15596
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001094Metagenome / Metatranscriptome780Y
F003784Metagenome468Y
F005558Metagenome396Y
F016784Metagenome / Metatranscriptome244Y
F093528Metagenome106Y
F095162Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1075013F003784GAGMDHSGTDFAAYGLSSPEPRQVQRDTGNKTATNPLVDHAAVTGYRALGVSTEDLTSFIESFASLRAQRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Ga0153700_1075022F016784GGAMEGCLVEFNTFDYVEPEFKNVMATGEYAAHYWFEQGWKACRLAFLLHDQAEKAGAFRV*
Ga0153700_1075024F001094AGGAGVNKEKLIAIAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKAVEFGRKAK*
Ga0153700_107503F005558AGGGGGMNQESMSWSEIAQLTHATQVENFDWCWCEDNEGNENPYSDCPKEDK*
Ga0153700_107504F093528AGGAGGMSEERSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPEKSVSDVVKEIKEEEGE*
Ga0153700_107508F095162GGAGMENEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPDAYKELLEKEKVSDEQEGKAWIDLNGTTISPRIVARAKARGITLTQTDTNQGNNGGEG*
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