Basic Information | |
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Taxon OID | 3300011339 Open in IMG/M |
Scaffold ID | Ga0153700_10850 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 14479 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (12.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Seoul, South Korea | |||||||
Coordinates | Lat. (o) | 37.5254611 | Long. (o) | 127.0168945 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026004 | Metagenome | 199 | Y |
F037731 | Metagenome | 167 | N |
F042339 | Metagenome | 158 | Y |
F069698 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0153700_1085012 | F069698 | N/A | MDFQPRDLITIIGGAVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLSDSIKDTKDEFNTKLNTMKDEQNKAIDKLEKKIDVIASQNLTISTNLAELAGFIRGNK* |
Ga0153700_1085013 | F042339 | N/A | MERLKVTYYAKITGIQASSYETLAEIYKNKESIEKAIATEKDNEIKELKKKNRRLIITNTALTLGITAVAVSTIYFAIL* |
Ga0153700_1085014 | F026004 | N/A | MEKSKLRNTVLIAAVAVVALIMIITGVKSCNEDKDPAIERLRSINDSLYDVIDLNNRKADSLFIKIDSIEIHQDTIIQQQQITNEIYRNETYNILSSSPSSANAQFRTTLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ* |
Ga0153700_1085016 | F037731 | N/A | MKKQQTNPQPNKVDFKGLRYKLQLFDGFWSIPLAFLVFAVSGTVSVAYFGDALISTEYIQYIVLAAMVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLCLYAFYFAAYLYILHMLMTVTA* |
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