NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_11116

Scaffold Ga0153700_11116


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_11116 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12110
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035227Metagenome172Y
F035278Metagenome / Metatranscriptome172Y
F056337Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1111610F035278GGAMNDKHIKKIIDKQFKIADLDIKYEDICNNQVPNWYQKYTYSPEKNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLKTSTRSIKDNKKK*
Ga0153700_1111615F035227AGGVNDNPSNIHRAVNISTLSDKEIKKYTLVKIGELFEKNDYILLYDDQYVKIGDGNRLLKIKITKENSVYRKK*
Ga0153700_1111620F056337N/AMSDDYNNNSYDAVLSRMEQKLDTISDNINDIKKSHKDLESRVAGLEYFKYYLAGIVAAVTIGANYLMNKVKNG*
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