Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_11237 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_11237 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11125
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (75.00%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

11125

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (75.00%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F010398	Metagenome	304	Y
F013084	Metagenome	274	Y
F015472	Metagenome	254	Y
F018927	Metagenome	232	Y
F027516	Metagenome	194	Y
F033432	Metagenome	177	Y
F048994	Metagenome	147	N
F057375	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1123710	F006220	AGG	MKKFKRFVEELAIASGTEMMRASQMRPATFKDKSKYNRKVKHKKVENND*
Ga0153700_1123711	F007310	N/A	MRTVLWNDSERWFNHHHYECLIEDITGFNLQKDLCSETVKYMAKRLRDTPYHRAFRSKYSIYQDEYNKVVEIFNYQANNEGRLIVHNEKVQAFC*
Ga0153700_1123712	F013084	N/A	MGIMNVIGLMAEAKETAIYRGHNVKNWDVLGGDCYSLECKDCKMTVMVKEYPLPNEINVGGEAIALTCVKPEKKKREKKP*
Ga0153700_1123713	F010398	AGGAG	MQVTIEGVMKVNYQLTIDEDVFNEACEDAGLDPAKYKTFSKDQWQELNPHLIQAVVDNEDEIDETEIHSQSTIFVDTVTIDDPSNMTTVYYNQDRTFDSVEIM*
Ga0153700_1123715	F008494	AGGAG	MTKQEVINMFMSAVGKYTVAIDATADNNIKYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKISEQTKDLITAKREAEYVLETARANEARIKAEVDQIKYIIRALEVKDEA*
Ga0153700_1123718	F018927	GGA	MEKHIEITRYLSVDGVTTYYVIEKKKNSSGIIWYGTNKQAAYQVAYRSAKKNNSPLYAIQYQSEIDENGAKFIIPVGNERLSN*
Ga0153700_1123723	F057375	AGGAGG	METVDFVNASDFFEAIELGSFESQEFLDQFTYGDSLTDFTLIARTTFLQRLTKFIGECEDIAEKDVMMQSLKEFTFGLLGCIKHVNIEG*
Ga0153700_1123724	F027516	AGGA	MTYASYIAKCEVAKTAFQCNVSAALMTEIATPEQKLGWIAEDLKKLEAELEAIGKAFDEQDEVGDPFAEEAK*
Ga0153700_112373	F015472	AGGAG	MEPRYLNNGGTRWVTADKIRVVGIHNGKTYYKMRKPMYWEAMGNFVRCYVKVGDNVFRGTTYDNNGVIEFDIMKSYRLR*
Ga0153700_112374	F033432	N/A	MIWARHFVSEYRKKFLSLWSAIMAEERWHKFDSQACIPACKGWNAWAPLCECGKNYCTFKPSGNIEDMQMVIEARPLNF*
Ga0153700_112377	F004583	AGGAG	MKYTRNSDRLREILISTRNQIVSLKDIQMDIMRYDNKVANQIATQISALEEVYKHQLSLVNQAESIEPKRNGWFSGHIKTREDRLSNIMD*
Ga0153700_112378	F048994	N/A	MIGTVKFEFGAMSLYVNGVCVATTSTMAGIKHVAKRYNLQGYILATG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_11237

Overview

Ecosystem & Geography

Associated Families

Sequences