NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_11237

Scaffold Ga0153700_11237


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_11237 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11125
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F006220Metagenome378Y
F007310Metagenome353Y
F008494Metagenome / Metatranscriptome332N
F010398Metagenome304Y
F013084Metagenome274Y
F015472Metagenome254Y
F018927Metagenome232Y
F027516Metagenome194Y
F033432Metagenome177Y
F048994Metagenome147N
F057375Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1123710F006220AGGMKKFKRFVEELAIASGTEMMRASQMRPATFKDKSKYNRKVKHKKVENND*
Ga0153700_1123711F007310N/AMRTVLWNDSERWFNHHHYECLIEDITGFNLQKDLCSETVKYMAKRLRDTPYHRAFRSKYSIYQDEYNKVVEIFNYQANNEGRLIVHNEKVQAFC*
Ga0153700_1123712F013084N/AMGIMNVIGLMAEAKETAIYRGHNVKNWDVLGGDCYSLECKDCKMTVMVKEYPLPNEINVGGEAIALTCVKPEKKKREKKP*
Ga0153700_1123713F010398AGGAGMQVTIEGVMKVNYQLTIDEDVFNEACEDAGLDPAKYKTFSKDQWQELNPHLIQAVVDNEDEIDETEIHSQSTIFVDTVTIDDPSNMTTVYYNQDRTFDSVEIM*
Ga0153700_1123715F008494AGGAGMTKQEVINMFMSAVGKYTVAIDATADNNIKYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKISEQTKDLITAKREAEYVLETARANEARIKAEVDQIKYIIRALEVKDEA*
Ga0153700_1123718F018927GGAMEKHIEITRYLSVDGVTTYYVIEKKKNSSGIIWYGTNKQAAYQVAYRSAKKNNSPLYAIQYQSEIDENGAKFIIPVGNERLSN*
Ga0153700_1123723F057375AGGAGGMETVDFVNASDFFEAIELGSFESQEFLDQFTYGDSLTDFTLIARTTFLQRLTKFIGECEDIAEKDVMMQSLKEFTFGLLGCIKHVNIEG*
Ga0153700_1123724F027516AGGAMTYASYIAKCEVAKTAFQCNVSAALMTEIATPEQKLGWIAEDLKKLEAELEAIGKAFDEQDEVGDPFAEEAK*
Ga0153700_112373F015472AGGAGMEPRYLNNGGTRWVTADKIRVVGIHNGKTYYKMRKPMYWEAMGNFVRCYVKVGDNVFRGTTYDNNGVIEFDIMKSYRLR*
Ga0153700_112374F033432N/AMIWARHFVSEYRKKFLSLWSAIMAEERWHKFDSQACIPACKGWNAWAPLCECGKNYCTFKPSGNIEDMQMVIEARPLNF*
Ga0153700_112377F004583AGGAGMKYTRNSDRLREILISTRNQIVSLKDIQMDIMRYDNKVANQIATQISALEEVYKHQLSLVNQAESIEPKRNGWFSGHIKTREDRLSNIMD*
Ga0153700_112378F048994N/AMIGTVKFEFGAMSLYVNGVCVATTSTMAGIKHVAKRYNLQGYILATG*

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