Basic Information | |
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Taxon OID | 3300011339 Open in IMG/M |
Scaffold ID | Ga0153700_11237 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 11125 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (75.00%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
Associated Families | 12 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Seoul, South Korea | |||||||
Coordinates | Lat. (o) | 37.5254611 | Long. (o) | 127.0168945 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004583 | Metagenome / Metatranscriptome | 432 | Y |
F006220 | Metagenome | 378 | Y |
F007310 | Metagenome | 353 | Y |
F008494 | Metagenome / Metatranscriptome | 332 | N |
F010398 | Metagenome | 304 | Y |
F013084 | Metagenome | 274 | Y |
F015472 | Metagenome | 254 | Y |
F018927 | Metagenome | 232 | Y |
F027516 | Metagenome | 194 | Y |
F033432 | Metagenome | 177 | Y |
F048994 | Metagenome | 147 | N |
F057375 | Metagenome | 136 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153700_1123710 | F006220 | AGG | MKKFKRFVEELAIASGTEMMRASQMRPATFKDKSKYNRKVKHKKVENND* |
Ga0153700_1123711 | F007310 | N/A | MRTVLWNDSERWFNHHHYECLIEDITGFNLQKDLCSETVKYMAKRLRDTPYHRAFRSKYSIYQDEYNKVVEIFNYQANNEGRLIVHNEKVQAFC* |
Ga0153700_1123712 | F013084 | N/A | MGIMNVIGLMAEAKETAIYRGHNVKNWDVLGGDCYSLECKDCKMTVMVKEYPLPNEINVGGEAIALTCVKPEKKKREKKP* |
Ga0153700_1123713 | F010398 | AGGAG | MQVTIEGVMKVNYQLTIDEDVFNEACEDAGLDPAKYKTFSKDQWQELNPHLIQAVVDNEDEIDETEIHSQSTIFVDTVTIDDPSNMTTVYYNQDRTFDSVEIM* |
Ga0153700_1123715 | F008494 | AGGAG | MTKQEVINMFMSAVGKYTVAIDATADNNIKYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKISEQTKDLITAKREAEYVLETARANEARIKAEVDQIKYIIRALEVKDEA* |
Ga0153700_1123718 | F018927 | GGA | MEKHIEITRYLSVDGVTTYYVIEKKKNSSGIIWYGTNKQAAYQVAYRSAKKNNSPLYAIQYQSEIDENGAKFIIPVGNERLSN* |
Ga0153700_1123723 | F057375 | AGGAGG | METVDFVNASDFFEAIELGSFESQEFLDQFTYGDSLTDFTLIARTTFLQRLTKFIGECEDIAEKDVMMQSLKEFTFGLLGCIKHVNIEG* |
Ga0153700_1123724 | F027516 | AGGA | MTYASYIAKCEVAKTAFQCNVSAALMTEIATPEQKLGWIAEDLKKLEAELEAIGKAFDEQDEVGDPFAEEAK* |
Ga0153700_112373 | F015472 | AGGAG | MEPRYLNNGGTRWVTADKIRVVGIHNGKTYYKMRKPMYWEAMGNFVRCYVKVGDNVFRGTTYDNNGVIEFDIMKSYRLR* |
Ga0153700_112374 | F033432 | N/A | MIWARHFVSEYRKKFLSLWSAIMAEERWHKFDSQACIPACKGWNAWAPLCECGKNYCTFKPSGNIEDMQMVIEARPLNF* |
Ga0153700_112377 | F004583 | AGGAG | MKYTRNSDRLREILISTRNQIVSLKDIQMDIMRYDNKVANQIATQISALEEVYKHQLSLVNQAESIEPKRNGWFSGHIKTREDRLSNIMD* |
Ga0153700_112378 | F048994 | N/A | MIGTVKFEFGAMSLYVNGVCVATTSTMAGIKHVAKRYNLQGYILATG* |
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