NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_11362

Scaffold Ga0153700_11362


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_11362 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)10293
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F044967Metagenome153N
F051684Metagenome143N
F096618Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1136211F044967GAGMKKRNWPNTNGGTPMEIEMIEKTKDRFDLEQEILQCWNITDDIKNYVAEGATSEEFSALAQYYERKFDRLWNTFESMIHERKM*
Ga0153700_1136213F051684AGGAMYAWIIKHQDVISGFVSGVSLMVAADYFARGDMTYGSLSLFVSVANLLLSGKKMGQHGQPN*
Ga0153700_1136215F001957AGGAGMNSVDMANNLIFRARHLQEFVVTTELPDDFGFRGVIPFDMQITGNILEARVWAVDFNEAVDRLNEFLQNDD*
Ga0153700_113626F096618AGGAGMSRMSELDLDIQYLLEKGRTAMDIARELEIPVSWVYEKPKAVEEPQEVLSPFATINS*
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