NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134119_1143270

Scaffold Ga0134119_1143270


Overview

Basic Information
Taxon OID3300011370 Open in IMG/M
Scaffold IDGa0134119_1143270 Open in IMG/M
Source Dataset NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location NameUSA: Point Reyes National Seashore, California
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004916Metagenome / Metatranscriptome418Y

Sequences

Protein IDFamilyRBSSequence
Ga0134119_11432701F004916N/AMKTSYVLFGLFALLCVASMSVVSAMDMELESEAAPCHPQCRWQCDDPSCPAQCHPVCERPKCQVHCEETPCAACKIHCDKPQCNVRCPKDLCESNDCPKCETVCAPAKCRTACTAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCEKPACAYQKPAKLNITSSPCCQCNAANVKASLIQAGEAEGEALSFLEAMSHMKHVAQETGEAQCCPCAQ*
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