NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0154002_1035117

Scaffold Ga0154002_1035117


Overview

Basic Information
Taxon OID3300011393 Open in IMG/M
Scaffold IDGa0154002_1035117 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New York, USA - TSNY086 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New York, Robert Cushman Murphy County Park
CoordinatesLat. (o)40.8926Long. (o)-72.8224Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096355Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0154002_10351172F096355N/ALGGGSYRGRGGHITWRAGVPHTGENRGAGGNTFRGGYQMGLRRDPNAMDVDRGRGGDRTYYHCGKFGHMAQNCWGRNKARVVETPQESAKENEGQ*
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