NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153933_1002414

Scaffold Ga0153933_1002414


Overview

Basic Information
Taxon OID3300011411 Open in IMG/M
Scaffold IDGa0153933_1002414 Open in IMG/M
Source Dataset NameAttine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5213
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: New Jersey, Wharton State Forest
CoordinatesLat. (o)39.778Long. (o)-74.6307Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101590Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0153933_10024146F101590AGGAMYKFFSSPLPPSELISKLPEFADPKKIDPSKPSLYEGEKEIIAQVKGTRFKAERRLKLGWGLAWFSPGFWFKPVLTGSIAPLKEGSAVIFEGGTPVPTKVLWALLIVIVAQAGGIFLVLDYPVNISFAGLDAGSYMFATFGALNTIIGILVVLPLIGWWLTRHDLAYVAAAVEDHLKLQPVPKSTVDWLVGV*
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