NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137442_1119746

Scaffold Ga0137442_1119746


Overview

Basic Information
Taxon OID3300011414 Open in IMG/M
Scaffold IDGa0137442_1119746 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9776Long. (o)-107.0026Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018028Metagenome / Metatranscriptome237Y
F039081Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0137442_11197461F039081GGAGGMKAQGTVKGILFEGSDGAEYLLGFAGTRPVPTPILSRRQADGTFSLVEDVSEASKVATRQLGISGPHLIGPGMGKSVFLWTAFKEALKTFPPVPTWPTWSP*
Ga0137442_11197462F018028AGGAGGMTNGNPYAFHVRPDMRQGLASELPLPTRLVSNEEFPPLPQTAAQRR

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