Scaffold Ga0137455_1038103

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137455_1038103

Scaffold Ga0137455_1038103

Overview

Basic Information
Taxon OID	3300011429 Open in IMG/M
Scaffold ID	Ga0137455_1038103 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1340
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9777	Long. (^o)	-107.003	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054395	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137455_10381032	F054395	GAGG	MVHATASVCFQRWTGMMVKLCDQPVDLLIGPIVEKIGVGQLWKGGLHYGGLFDGALFDTMAVIRRKAGESLLEGVDVEEGDGKRADATAGAAESAGNFTQQGGGCPLEPVVSFLVQRNRVGRTGF*

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