Scaffold Ga0137443_1000174

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137443_1000174

Scaffold Ga0137443_1000174

Overview

Basic Information
Taxon OID	3300011433 Open in IMG/M
Scaffold ID	Ga0137443_1000174 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9852
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.978	Long. (^o)	-107.0026	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F013826	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137443_10001743	F013826	N/A	MAVCWRCPACSEVSCEEDVGATGNPVACDHCERPFQPHQTLCAVCDAPNPWARRDSLHFLCRQCGTTQTYFRGATAIASPSRGPGAA*
Ga0137443_10001744	F002324	GGAGG	MGEIRLFQICYEGELTAGVSHAMRRLGAEPNFDQSWYVWLSEERHAAPLVRWLRSQIDDDARLLVACSQFTVARDFLLIRHSLTPDADYSELHDAIHRLGVLVELPFESTFVIQSDDRTDVQTLGLALGELCPDDALMVTGISHDWAYSDAGVSQMCVAAAADALQFRTF*

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