NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137426_1194606

Scaffold Ga0137426_1194606


Overview

Basic Information
Taxon OID3300011435 Open in IMG/M
Scaffold IDGa0137426_1194606 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8893Long. (o)-106.9078Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0137426_11946061F092677N/AMLLAMLAGACGGQGPADHQSEWRDVLQHKRAAVAPDASPDHKQVYADSVRAFVVKHPNHNRAVLVWQRLQLEFADELAAGGRYQDAIRIYRSVLTHHPENDHARSGLALAATRLAVSREGLLALRKGMSHRQVAALLGKPMPGWSVKNRRAGATFEAWYYRTRNGSLAGVYFREGKVFAA

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