Scaffold Ga0137458_1063268

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137458_1063268

Scaffold Ga0137458_1063268

Overview

Basic Information
Taxon OID	3300011436 Open in IMG/M
Scaffold ID	Ga0137458_1063268 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1013
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.978	Long. (^o)	-107.0026	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081517	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137458_10632682	F081517	GGAG	LILVADVPSMDGRYSAALAGWPLTFVRTMHEARSALAAKRCAAVVIGVYFDDSQMFDLVRAIRADDFQNEVPILCVRGSPGYTAVTTRTLETAVKALAADAFVDLLHFADEAAGDAALRSAVQRYLRA*

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