NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137427_10002766

Scaffold Ga0137427_10002766


Overview

Basic Information
Taxon OID3300011445 Open in IMG/M
Scaffold IDGa0137427_10002766 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7354
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8897Long. (o)-106.908Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066535Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0137427_100027667F066535AGGAGMSLNKWQETLVNSQVDGSALTAAAATSAIPAAAKFTLPTNYFDTIGKKLRIRATGRISSLITTPGTARFDVRFGATVVFDGLAVLLDTVAGHTNVGWILDIELTCRAIGATGNLMGQGLWTCEDILGVPATAPKGVLSAILPWNSAPAVGNNFDTTATQQIDLFFTQTVATGSMTVHQYEVIAPN*
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