Basic Information | |
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Taxon OID | 3300011980 Open in IMG/M |
Scaffold ID | Ga0119777_1010695 Open in IMG/M |
Source Dataset Name | Human oral microbial communities from Los Angeles, CA, USA - S01-01-D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of California, Los Angeles |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2351 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Los Angeles | |||||||
Coordinates | Lat. (o) | 34.0722 | Long. (o) | -118.4441 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F049707 | Metagenome | 146 | N |
Protein ID | Family | RBS | Sequence |
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Ga0119777_10106956 | F049707 | AGGAG | VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKEN* |
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