NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119773_1000761

Scaffold Ga0119773_1000761


Overview

Basic Information
Taxon OID3300011982 Open in IMG/M
Scaffold IDGa0119773_1000761 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Beijing, China - VLP3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Institute of Life Science, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11063
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From Beijing, China

Source Dataset Sampling Location
Location NameBeijing, China
CoordinatesLat. (o)39.9Long. (o)116.3Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076191Metagenome118N
F103430Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0119773_100076114F076191AGGAMKIIAENPAEEVLLWRIKALSDELVNQDNRYTRMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENAHHYDNPTTCVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDV*
Ga0119773_100076120F103430GAGGMEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLGELKEVLDQEAIAYQIENKINLI*
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