Scaffold Ga0119931_1014078

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0119931_1014078

Scaffold Ga0119931_1014078

Overview

Basic Information
Taxon OID	3300011984 Open in IMG/M
Scaffold ID	Ga0119931_1014078 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	891
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant → Freshwater Microbial Communities From Drinking Water Treatment Plant - The University Of Hong Kong

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F016115	Metagenome / Metatranscriptome	249	Y
F035200	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119931_10140781	F035200	GAGG	MNIRYIVLRDGYRVSEDMHTDLKEAEAEAEFWRSVIRRWPDGTKVIIKKIGGDRA*
Ga0119931_10140782	F010746	AGTAG	MTYYCSISGEALSPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGSLFDNEIVAEVEE*
Ga0119931_10140783	F016115	AGGAG	LKILEESFTSKGFKLQQIKRDGDVAIYKKQLDDPESYNYHYEVIAIKRHNGYEIAGVKMPPSEMYPSDSQWGDWAYTCSTIEDANNRFNQLTEKLNNYNATAISPSGEKRGRGRPRKIVLTEKENIVE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.