Scaffold Ga0120156_1002523

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120156_1002523

Scaffold Ga0120156_1002523

Overview

Basic Information
Taxon OID	3300011996 Open in IMG/M
Scaffold ID	Ga0120156_1002523 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4983
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.65
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120156_10025232	F002324	GGAGG	MGEIKLFQICYEGDLNAGVSSALARLGAEPNFDQSWCVWLPEGRHSAPLIRYLRAHIGNDPKLLVACTQFTTARDFLLVRHSLTPDADYSDLHRALERLGTVVELPFESTFVIRSDDRTDVQTLGRALGELCPDDSLMVTGVNHDWAYSDAGVSRMYVADATATVLLRPF*

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