Scaffold Ga0120114_1000158

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120114_1000158

Scaffold Ga0120114_1000158

Overview

Basic Information
Taxon OID	3300011998 Open in IMG/M
Scaffold ID	Ga0120114_1000158 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25049
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (58.06%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071797	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120114_100015814	F071797	GGA	MFIPVLAIAVAILLAGCGNTTTGGPSKTPALSPTPFVATDSHFSAVFPATPTRQTQNINQPGLNTTMTLYLATTNDEQVAVAFEQLPAAPQGAAVQTGLEAGVAGSATNTKGQVLSKSPTQFVGQPAEDAVIQTPGAVIHERLVFIGSKLYVLEGITRTTESKHPAYDTMLATFKTI*

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