Scaffold Ga0120148_1009459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120148_1009459

Scaffold Ga0120148_1009459

Overview

Basic Information
Taxon OID	3300011999 Open in IMG/M
Scaffold ID	Ga0120148_1009459 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2437
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.65
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039883	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120148_10094594	F039883	N/A	GEATTRPVPPPTFTGSPAAGQPIELEVENLGGTMTAGGVIVQAADDLYAGELTLPDKAPPRRIVLQPAMKAWQRSLEPRCLLLVARDVSGRCWDCVDGNKPIKDPRKWIAGQLRELRLQGVVDFPGLTGQPKGL*

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