NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1001180

Scaffold Ga0119951_1001180


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1001180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15850
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010248Metagenome / Metatranscriptome306Y
F012013Metagenome / Metatranscriptome284Y
F024786Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100118029F010248GAGVRKSERIRLLEMEMLRMQFQIEYLSKAIDLLLQENKIAGPELDAGKWYNNKLNKDK*
Ga0119951_10011808F012013AGGAGMTIDLQEATRRDDTFDELMEINLHLSQMSVFPSLMWTWAFDVLKDIYDNNQYKDLAINDYVDEAVPEGVTFKQIFDKFWEDADSLGLNMDLGGETIEEVIRDWMRENDFLVALDEDGWLDDEEEQDEDN*
Ga0119951_10011809F024786N/AMPNGRVESLPVYRVFGTKYQNYYTIIEAADQFEAVDKANALPETEWNSIPTDDVIEATDVYLNEDTSDELQLNI*
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