NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1001986

Scaffold Ga0119951_1001986


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1001986 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11697
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005558Metagenome396Y
F029728Metagenome / Metatranscriptome187Y
F082599Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100198611F005558AGGAMNSSWSEQAELTHETQVEQYGFCMCEDTEPHEHPYDDCPKG*
Ga0119951_100198617F029728AGGAGVYLNPITVDGTTYNFTEESLKELIKSEQAFKRKHEAILVEQQESYRKLASIRAKVYDFFTEAFEDGGDEATVTREGVNELLESIGSDTLVTTWSATVEITVTVTGIKASSPEEAEDIINDNIEVNGYDLDIDGQEVNVYGIERE*
Ga0119951_10019868F082599AGGAGMSYTVNEIADLNESIDKAILSLKAANNILEEMMATGRIYVEEE*
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