Scaffold Ga0119951

Basic Information
Taxon OID	3300012000 Open in IMG/M
Scaffold ID	Ga0119951_1002233 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012000 Open in IMG/M

Scaffold ID

Ga0119951_1002233 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Institute of Technology

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10813
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10813

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.21	Long. (^o)	-83.96	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.21

Long. (^o)

-83.96

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F033400	Metagenome / Metatranscriptome	177	N
F037223	Metagenome / Metatranscriptome	168	N
F102702	Metagenome / Metatranscriptome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0119951_100223315	F037223	N/A	MTLFEHILIEGRVDDFKNLLKNKFSIDYVQKIINRDTSKNHKNLLWIGKILKTEPDINEEDLFKNLEIFNKVASSTDLYSFKEYSTFLSFLQKKSKEVQMGKMAQIKAGSRTIKDDKRWLVVAPETHDASRYFGGGTSWCISTSNDRYWKDYYYAQTIVMIKDRSKKPDNDLFKVAIVGNAYEQLWDTSFSDKIDKIRELSKHVDLYNVNDNKLSGDQKINYLGQLPEDLIDDLMNYFNDDDVYERQTNHNYELARERYDEGGKEELLKSLFNTTVAYFDADVDFHADDFSDLMSRQFADEIQDGNWDEFLSELWGACITYQGVEDDSFYAEVNTRNFKNLISDTSYDLNTYLDLAKEVLKNEDISNMDNIIKDALIKTSDDGDPYTVIKRQANQLKDTNYNDIILSSLNAYNAKNNPTFIQGQRSLGPEFMGIVNKFKPKNIEDVIKVLSINPRAKDMIDQIQRYRRDLYESKKKRTIKYRDFYKL*
Ga0119951_100223316	F102702	GAG	MNNEGISLIDTKKGIPRLNFRFDKDYPEDFISIGSGKFIQKRTGDINLIYLAHKFMSEKEVMDQLSFYINQTDINANPTINAKIARYPDLFFTYKKEIRKAIKNLSATDYISFTGKNIEHVKTMIHRGILDFNNRINNVKDYDLIITVPSQAPLNQMIINEFKSYINPEKTLVIDDFLLKNRVKDIRWDNNEYLEVEEREGKNPDQIAKVRKMRDIMLKSIYSKGNLNKDFQVKMVTKSSLRRYFHKFMHINDKLDEQLFLKINNGKILIIDDSFGSGVTMKE
Ga0119951_10022337	F033400	N/A	MNTNTTTRTFTYKFNGKKVDANTLVKNLNDDIALTHAINRFREENNMTKARNPYSWWKYVLATMTYFPKGVEYTTVINILNDIAGVTINKSTATLLARATAGNAPCVVRREYAVRLPDLVQNTNLTASFNRNKITKKNGRPAFQFKFENVKEARQVILLNAPEMTSLFDLLDKKIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0119951_1002233

Overview

Ecosystem & Geography

Associated Families

Sequences