NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1004321

Scaffold Ga0119951_1004321


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1004321 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7078
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000714Metagenome / Metatranscriptome924Y
F003663Metagenome / Metatranscriptome474Y
F004051Metagenome / Metatranscriptome455Y
F017134Metagenome / Metatranscriptome242Y
F038643Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_10043211F000714N/AMCTLVSVEDATIQPTTTEEEKMETATIGSDALHSPEVEYNPNLLVTYKVLHGYSDPEYTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKNIILESYADSEDQETLQAIAEALGIELTKDVEFTATIEVSGTITLNLLEDYDLESEITDALYVDANHGNIQIDDTEVCHVREAY*
Ga0119951_100432110F038643AGGMKDMTRWALFPFTVDGVEFVSKLDIEGSMYQRVTKVPAHVFNAMNEGAIRELVGKVSLMSRDEIQTQLDRVNEGYSQAYIALA*
Ga0119951_100432113F017134GGAMEQFTVACLNYEICGAEETFDSIEEYEIYGDDYICAECYDSEEMEFYEIAGWADADALASAGHGMDEDY*
Ga0119951_10043217F004051AGGAMTIDNKTYAVGDLFTTLKSKETGVIKEIISNASGSVRVRLETENGERWTTISADSLA*
Ga0119951_10043219F003663AGGAMLSTATALLDATKESIFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADSITKVLLTEKEMSDLIATIDELENLSETILEENE*
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