NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1018743

Scaffold Ga0119951_1018743


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1018743 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2531
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_10187432F063343N/AVNYLILLGILGLFALGSKSAVSWVQSIKDTLLKLMVPGADRRLFSGFTQSTFSWTRNPASWVRTFNWTGYAAGINGLGGVGGGTLITRRHVLFANHVPYPARPFDIFFVNADSRTFTYKVVNVQQVGDTDIAIGTLDRDADASLCVYKVLPDNWPDYAKAKTSSFSAMGVTGTEVSTALPVLYSNQDRKVSTADLINVRLGVADLGIPAFEVARSFGDPIRGGDSGNPIFVPVGNELVLLGGFWKLGSGNVIASFPWIITYRGAIENIIGQKLQVVDLGRFS*
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