NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120163_1004083

Scaffold Ga0120163_1004083


Overview

Basic Information
Taxon OID3300012003 Open in IMG/M
Scaffold IDGa0120163_1004083 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6655
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022478Metagenome / Metatranscriptome214Y
F048609Metagenome / Metatranscriptome148Y
F106019Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0120163_10040832F048609GGAVADDQEPEIDIEALQEQLASFSVEQFLISAASTIASLAYAKLEREDLPQARKAIDALAVLAPLLEGDLAADLGLALTKLQVAYAEAASA*
Ga0120163_10040835F022478N/AVENRVLIFAEALDVAAEGAVWYARRIGGGTFEAVHVPSKTTDTGIHARWFDFTGGEPRLDVRPPGSDPTEVVLREVARLRGGRDDVVVTVVLPEQFSKRSLLAAAQRAQFRLKLRLLTEPGVVVADLPAVTSERRPEGHVPDTLILRVLAGEPDALTRRAIEYAQELQGVDELRALHFGPREWDDAELGIPVDDAPLTGRLGDSILVEVRKLTADPATAVNVVLPERIDTGLRRLRGPRAIAIKRCLLFEPHVILSSVPTRA*
Ga0120163_10040837F106019GGAGMYRTLVRTIAVVMIVMGIAMLSLTLRHGLGVGVILGLLFIGAGVGRLLMLRRKT*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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