Basic Information | |
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Taxon OID | 3300012006 Open in IMG/M |
Scaffold ID | Ga0119955_1009904 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Institute of Technology |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3655 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.21 | Long. (o) | -83.96 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007859 | Metagenome / Metatranscriptome | 343 | Y |
F008688 | Metagenome / Metatranscriptome | 329 | N |
F009135 | Metagenome / Metatranscriptome | 322 | Y |
F010081 | Metagenome / Metatranscriptome | 308 | Y |
F013524 | Metagenome / Metatranscriptome | 270 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0119955_10099042 | F009135 | AGG | MTNNPKYYLTVNLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED* |
Ga0119955_10099043 | F013524 | N/A | MKTNKEVVDRLKEFTNNNCNTTIDPKLCEDIRYLCDEVERFSREIVKANNHMDEDHITIQRYKNKLEKCQQNLSIYEPF* |
Ga0119955_10099044 | F008688 | N/A | MLGGLAAVLLTAMTVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMFKDSHNYTVEERELTE* |
Ga0119955_10099045 | F007859 | GAG | MKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNNVYTAHTNYYRAYYNCDGKIIKITPNN* |
Ga0119955_10099046 | F010081 | N/A | MQDKIDSIIKKHCLEMQEVDKTKSIPMIVKQLDGIVYSMYRELYGLRDIRSDNYYLNSFTADDKKGHCC* |
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