NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119955_1009904

Scaffold Ga0119955_1009904


Overview

Basic Information
Taxon OID3300012006 Open in IMG/M
Scaffold IDGa0119955_1009904 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3655
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0119955_10099042F009135AGGMTNNPKYYLTVNLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED*
Ga0119955_10099043F013524N/AMKTNKEVVDRLKEFTNNNCNTTIDPKLCEDIRYLCDEVERFSREIVKANNHMDEDHITIQRYKNKLEKCQQNLSIYEPF*
Ga0119955_10099044F008688N/AMLGGLAAVLLTAMTVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMFKDSHNYTVEERELTE*
Ga0119955_10099045F007859GAGMKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNNVYTAHTNYYRAYYNCDGKIIKITPNN*
Ga0119955_10099046F010081N/AMQDKIDSIIKKHCLEMQEVDKTKSIPMIVKQLDGIVYSMYRELYGLRDIRSDNYYLNSFTADDKKGHCC*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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