Scaffold Ga0120174_1023718

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120174_1023718

Scaffold Ga0120174_1023718

Overview

Basic Information
Taxon OID	3300012008 Open in IMG/M
Scaffold ID	Ga0120174_1023718 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1912
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063002	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120174_10237184	F063002	N/A	MSGGGDVYLFTGQQYHHILLYEPGPEQDPPPNTCSNSIAGHGVTSLLGIFYLPAAGVTITGSSGYLSTIAGGVIAWQATINGNGSVSIVGDPSLGTWPPAVHLTQ*

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