NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153799_1000525

Scaffold Ga0153799_1000525


Overview

Basic Information
Taxon OID3300012012 Open in IMG/M
Scaffold IDGa0153799_1000525 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12395
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.581667Long. (o)-79.9225Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F001176Metagenome / Metatranscriptome756Y
F004666Metagenome / Metatranscriptome428Y
F014250Metagenome / Metatranscriptome264Y
F018349Metagenome / Metatranscriptome235Y
F028166Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0153799_100052512F004666AGGAMATKREYLVSKGITVGRRGRFSSAAKQALSEAEKNGIKFSAEVKQAKN*
Ga0153799_100052515F014250GAGGMMNSTYLPERLQKLIDMGESGTNIMHGQLKNLMLQAEEQMLQAQAEEDRTGEAMDSMERKYWEGHLDALTGVYALTYQLAFAIDERMKKNEN*
Ga0153799_100052520F000450AGGAMGDRANFGFVQPNGNTIVLYGHWSGYQMLANLAEAVAKAQPRWSDPSYATRITISQMIGDGWSMENGWGLHVNEIGDNEHKIAIVDFNQMTFSLHEEDSHYNLNNKVRGMKNEALFTMDLRAFVEKYTDVAILV*
Ga0153799_100052522F018349AGGAGGMDYKEGFQDGVQFTREVVIANIRKWAETHEDGVALDWVADRIEFGTLDNDLG*
Ga0153799_10005256F028166AGGAGMSDGINLTGFNETGEQSGSNSLDLNPTGQEPKPAFPAKDVSSQDGAGLGNGGK*
Ga0153799_10005257F001176GAGMSNGTGMDSPPTDQPSGAVTAAEVGRKKPSQGRFKSGIQEKRPIKVDRNRHGIRRETTIVPKKTRPKKV*
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