NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153799_1000537

Scaffold Ga0153799_1000537


Overview

Basic Information
Taxon OID3300012012 Open in IMG/M
Scaffold IDGa0153799_1000537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12231
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.581667Long. (o)-79.9225Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039116Metagenome / Metatranscriptome164Y
F062727Metagenome / Metatranscriptome130Y
F082609Metagenome113N
F098936Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0153799_100053711F098936N/AMERGAMQDTPTIKIADSELALLQAFTQGYINALVANDKAYEGMDEFYCFNDKWDINIHSVGHKPRTIYAVAYPQTIDADGYLSTDTSNWVEIGQYDMNGTAKRKVTQ*
Ga0153799_100053712F082609AGGMKQQPTVHHYILTYDSDNQLWYHDVETEREKFPDGATMNLDTGETYWGYLGDGEYAPNESELNEQIVRAVRQLNQNNREVPFTVEDFEDYKTAELDDEVSRTHIPYPPF*
Ga0153799_100053727F062727N/AMDGGWALILSAVVTAVGGVIVTVIAQFRKENQEDHAVVSGMLQHVFSSVNRVEHKVDKVANGLESHIKEHKK*
Ga0153799_100053729F039116GGAMDMGRYRHGFNYLVRSYLKTGTSVNRCRYFDTLVDIPNTKGHRMNSMIAKTLDLTQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTSEEISAAFGTKTKKK*
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