NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153799_1004627

Scaffold Ga0153799_1004627


Overview

Basic Information
Taxon OID3300012012 Open in IMG/M
Scaffold IDGa0153799_1004627 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3447
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.581667Long. (o)-79.9225Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010612Metagenome301Y
F051888Metagenome / Metatranscriptome143Y
F056557Metagenome137Y
F067677Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0153799_10046271F067677N/ASEKEITMNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTNDPDHLDFIRKNLVDSDDCVVNIRGYMETKAGKKPGTWYDNMVITELTLA*
Ga0153799_10046272F051888N/AMTSFALSSSTQSFSCSHENPATQLDTREEYCAECTLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEFLDGVYDITNRLPSWLYLGKHVFPMFKQDELDAYLALPSWAVVCNKCHYQINKYMGCLTCEVCITTYSWSGIPFNYKIV*
Ga0153799_10046274F056557AGGAGMYLDTGTMIGIMIALIASILTIGYSIYIIKTQNQIIQRMSDATATRRKMER*
Ga0153799_10046277F010612AGGAGGMLDEDTPQWEHTVWIMAKVRCRTTHVNIDTAGDEALDDPSEWHVLEFDKGVKHSQEIVRVK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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