NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120187_1006975

Scaffold Ga0120187_1006975


Overview

Basic Information
Taxon OID3300012015 Open in IMG/M
Scaffold IDGa0120187_1006975 Open in IMG/M
Source Dataset NameTerrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)906
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location
Location NameUSA: Kessler Farm Field Laboratory (KFFL), Okalahoma
CoordinatesLat. (o)34.975667Long. (o)-97.519Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014599Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0120187_10069752F014599AGGAGMKRIACLAFTSLLLLAFLSAGMAQEPSNSVQERVVRETYRKLENYSAAAQAFQNDQTRGVYRSDANLRFELSDFRSGDIVEILNKPYAELVTLPTGDVVSLTRGGHSLNGGPQEATFAAAWERGQYASVFDPLWTVSDVFHFEPARYYDIRGYTAYQVTVKLEGRSRAYRALALFRESQDVQPEFWDAIVSGLGDVWKDKRPAYKSKTGETLSEASGTTAFAPTDFQATAGSD
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