NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120387_1092169

Scaffold Ga0120387_1092169


Overview

Basic Information
Taxon OID3300012016 Open in IMG/M
Scaffold IDGa0120387_1092169 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Missouri
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola abscessus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)41.314168Long. (o)-105.584589Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045434Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0120387_10921691F045434N/AMSRKSKDAEAPDSIIELDKKKILEELNSKGVYQDTGVIIKKWDDDIDESFITETNKNGSRFIGVLNGRLERHGYGINFYKSGEKYLGNFEQDLPNRHGIYLWAPSIKGRNIQIECYHGLWNNNKKDKNGIYIWMNEPLNNKNFDVANFDAYIGVFDNDKFVRGTYLSKISDDYYLYHGNFDSEGKKTDDNAFFYSSKYDRVLHGKIEKDNFVSAYVSFFESDSGEIKNLVYCTFDNMGSVENIIMQNDLKPEDKKKEEDGITLFRNVILEVDYFGIIYNRFHEIKDFIREHANSMEFLEDKNKFPNFMSLCTKYSEENIY
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