NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153801_1000513

Scaffold Ga0153801_1000513


Overview

Basic Information
Taxon OID3300012017 Open in IMG/M
Scaffold IDGa0153801_1000513 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9230
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061533Metagenome131N
F075040Metagenome119Y
F089880Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0153801_10005132F089880N/AMKKKELELFSPTQEGVLVPLSTYLRHMGEFVKDEWPGITITEAHIKKAWSKLQKNEYLDDDAPDEMLEMYERMSADWDMAKEMEEDRQNVDGYKPEPITATPEPVNESLALVESVKNGLELSSFTQKFDIGAGMTQCVPKGKVEMKDWVAAFAFGLTLESGAQWIIGDSVCALENGGHEDVVNQLCSNFKKSYSTVSGYARACRAFPVGKRDPMLPFTVYREIGNANFGDDKTNKKKQDELLEAAKTEKLSSTEVRNRVRHEQGRDDKPPHHRYLVLNVTNFANSEVVRTMPEEVQEHQLLIDLGDKSWFDPAEGEWIKFLKEQ*
Ga0153801_10005133F061533N/AMSNQLDGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGNTYGLKFFNNTQEQSIKGNVVTLSSVRGKHGLTGVSLEHESYEGKNGKVDRDIIKVTATGKIEFDQPSEEPARVAHTPKSIVTDNPEKAIDEIVEMHRYINSLVRHSYKDVEDEETLRSYVSSVFIEANRKGIRYSRHKVEEPKVEEPKEVEPDPSDWASAIVPSGSQKGKKLAAIGKPALTKLYEYYLEKGFTTPFAKCVEKAAEDLNLDAPTEVDDIPY*
Ga0153801_10005135F075040N/AMKDTPTVKKESVEKPTVQTSDMQREIYLRLISSAASDGRFLLGNLPNASAVVKQGDHLRGVSELLANCFQK*
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Institute for Fundamental Biomedical Research
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