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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300012017 Open in IMG/M |
| Scaffold ID | Ga0153801_1000856 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6761 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 42.6244481 | Long. (o) | -80.9227115 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F080977 | Metagenome | 114 | N |
| F099280 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153801_10008563 | F080977 | N/A | MFVDQIFEECAEILGTTDEKRVYRKITQAVQTLMESGHWMQSTADVDVCTGWDGCTIALPRGIDVPLAVNVDGSPVYFRNRLFQYHVNKGGKFNTVDWAWDDRGYVATLMQIIQPSQLVAIAESENDVGKIIRLTGTDSNNRDLRSQLKDGTGVDGLLIPIHSQSDFAYGTIAPDDATIRTREVTITPISKFASTTPHTLDSGQGMAITAISGTIPVPLSNGQTYYIGVLDALTIQIYNDSLNAEAGNYPLSLQSIVGAGPLKFLXXXXXX |
| Ga0153801_10008564 | F099280 | AGGA | MAKPTTEAAMPEPAMGMDLPEDMSGIPSPMAEEGAVTISVTKSKFDELHSIAMQLAGVIDALAADVEGQKAATESLEGQVPAAENAAMASEEDFLNSIASEGSMR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |