Scaffold Ga0153801

Basic Information
Taxon OID	3300012017 Open in IMG/M
Scaffold ID	Ga0153801_1001525 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012017 Open in IMG/M

Scaffold ID

Ga0153801_1001525 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4836
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (53.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4836

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (53.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.6244481	Long. (^o)	-80.9227115	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Ontario, Canada

Coordinates

Lat. (^o)

42.6244481

Long. (^o)

-80.9227115

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F039497	Metagenome / Metatranscriptome	163	N
F062447	Metagenome / Metatranscriptome	130	N
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153801_10015251	F082149	N/A	MKLGLHIDWCISRWFGRRNNLEIKIFLPTITFGINNDYENKWCGFVFNLKTDISFESYEYGKILSLILFGFGVKVSEFNL*
Ga0153801_100152510	F062447	AGGAG	MKHKIFWENNSRIKGIVPAEQIIKKTQTHNFPCEAVTIRMHDLNSKNPIAVAYFHGKESQHIGWGGQNHSFAETKLIVSFNKEKEEYGFNGAINSFSLQDLKEVLDSVRETLNKV*
Ga0153801_100152511	F032536	GGA	MNQKQTFEELMRSFRFHKNPILNWFLGEVSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYILDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD*
Ga0153801_100152512	F104482	N/A	MKKKKKRMTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFQFKLLPNFFYMNGKYFTECGFNWFGWIFEFQWNR*
Ga0153801_100152514	F034827	N/A	MKYNITSQDKEALTEFDKIKEGEVFSFFDPESVQRGNHAIYMKIRVPNTTSVNIIDLEDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL*
Ga0153801_10015252	F039497	GAG	MSEEDNFNCKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMQNAGKDEENED*
Ga0153801_10015259	F024040	N/A	MNIYVTGHNWLAKVDLEDSITKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLRNYEENCKEQGL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153801_1001525

Overview

Ecosystem & Geography

Associated Families

Sequences