Scaffold Ga0153801_1002336

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153801_1002336

Scaffold Ga0153801_1002336

Overview

Basic Information
Taxon OID	3300012017 Open in IMG/M
Scaffold ID	Ga0153801_1002336 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3749
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.6244481	Long. (^o)	-80.9227115	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007222	Metagenome / Metatranscriptome	355	Y
F026502	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153801_10023362	F007222	GGAG	MADKSGRGTYAITVDPYEFKNLLGLLGSFPAEYQQLVRDRAQPLSQRLAGQLMMSGLSAPAPQTKLVVQTIKTPRDRLIRVDIGGPKKVGRPYGGEASKSGKGNKVKRQAAPAGALLWGTEFGSHGGVDSIGRVFTNRFKTPYNKRGYWIAPAVDFYVPVVAREYTLMIQEVAKELRLN*
Ga0153801_10023366	F026502	N/A	MATLSGYSAATLYVGNSSIESAIYAVSIEVFQSRTAAGGQIEGVDFGATPYRMGRSLLNRVIGLLGNYIDVETMVG*

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