NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153801_1002393

Scaffold Ga0153801_1002393


Overview

Basic Information
Taxon OID3300012017 Open in IMG/M
Scaffold IDGa0153801_1002393 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin397(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039498Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0153801_10023931F039498N/ATPQIINNQLLFQSPFITSVPLLDQVINDESYLSLTKATSAFPFMVALGEICEFVDTSGGSCSNGQIFDQINGGFRTCPSCNGAGLKSRFSPSGMLLIKPKSSLSEGDSGLTGDYVKFVSPSMDTLKFLREEIDANFKKSREILHIPSSDQSATAGESVTATGSLNKMRALYAFLKPVSDQLFTIYEFMLITMGKMRYGDYFGGVTLVYPTTFDISTPSDYLSIIAEGVKAGVPPAVTYSNVYNYIKAINYTDDESSAIFELIMNADDLLLMNSADIIARIGLGMIEKWQDVLHQSAPQLIMELIRKFEPTADYQNFLDQPIQEQITQLNTLAVSRVSEVLDPIQRAQQSLLNGII*
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