NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153801_1003223

Scaffold Ga0153801_1003223


Overview

Basic Information
Taxon OID3300012017 Open in IMG/M
Scaffold IDGa0153801_1003223 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3157
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048283Metagenome / Metatranscriptome148N
F063657Metagenome / Metatranscriptome129N
F072296Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0153801_10032232F048283GAGMKGERVEIEVTYAPALIGVGPEVGDDVNASCDAFEVQVHKELSTSYPDADITVTRDHGHLADLSVVTHGFVDQRGVLTTRQAVWSDVWDMIGPYGRYRRPVRGGILQASVPVVVVRPASRPDVFTIVVDDASGDSVIECDEDEARAVMRSGFGVMA*
Ga0153801_10032233F063657N/AMNGDLMEDVVTEVSVTGAVTTDGRLRFRSPLDVEAWTHDHLVARLAWEFLIDGADNGVPRDTDEALERVQVKYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR*
Ga0153801_10032235F072296N/AMSFEDMTSMAFRRPQRTAVPSFQRSTSTGEKVDYEITHLCGHTGIIQVFAGSNPDNSRWVQAQKDRDCRDCYTAKMVESDQASVDAGKRVALDGGPKQIPWAQSVRQSRASEMRTWLESVTAVGAGAVKAGRLTQAEYEAGIQDVRAGFTDLMLGVEFSDEDYDHSGYAKWWIDTRKDALDTIIARLLPDRDILGTGXXXSRCRGRKVSASPAHPRCERGWKASRRSVPVPSRRVG*
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