NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153801_1007432

Scaffold Ga0153801_1007432


Overview

Basic Information
Taxon OID3300012017 Open in IMG/M
Scaffold IDGa0153801_1007432 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2035
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F019647Metagenome / Metatranscriptome228N
F051874Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0153801_10074321F019647AGAAGMKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEPQTMPAQAEHSDKPDLAALVFQMSAIYSQAYIDIYNKISEAGVPHE
Ga0153801_10074323F051874N/AMTTLQLIEQKVEVALQAINNLLPEGYYTTNTLSSTDFGNSGYILIKKICPINYIVDICKIRISDHYATNRGRQDTEIMIDLVRFNIDQLIALVDRKINPSNYEQVEIRTLTTDILTSNFQVGNKPYTTLSEPTFLGEVITKKGNVAHKYSWLKEDVTYTWIKKAN*
Ga0153801_10074324F003786N/AMEQKDAYKQTLNVISSVFPMYGIDGDLSFYANIAKEIVKTFGQIATNEIEIAFRMFSAESLELDEDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGRLEREKLYAEFPTMIKEFTGKTFEDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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