NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120192_10026953

Scaffold Ga0120192_10026953


Overview

Basic Information
Taxon OID3300012021 Open in IMG/M
Scaffold IDGa0120192_10026953 Open in IMG/M
Source Dataset NameTerrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)935
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location
Location NameUSA: Kessler Farm Field Laboratory (KFFL), Okalahoma
CoordinatesLat. (o)34.975667Long. (o)-97.519Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046231Metagenome / Metatranscriptome151Y
F055478Metagenome / Metatranscriptome138Y
F064480Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0120192_100269532F055478GGAGGMNPSMARWGVRGMDDFTVEELARLQQKLDGWIRQRAHDPERTRRRPWVMKPKTAHPA*
Ga0120192_100269533F064480AGGAGMMSSTTDHVHEGHDQTAPPPTDARGPEGTMDAPPETEASFEEIER*
Ga0120192_100269534F046231AGGAMATGRPQPSVVIDVRTPSTHAASVATTEREMGHPPRIIRGPDLCYLFQARDAARLPGLVDRWESYGIAAQVVLIPPTGGQSTRSSHSTSSSCQAQAGRDPSTPATGLIR*
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